LncBase Predicted v.2
Help
Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
Bulk download:
We have updated the bulk download module, which simplifies the download process! Please find the new online form by following this link
Deprecated!
This version is deprecated. Users are strongly advised to only use the latest, up-to-date versions of DIANA-Tools and Databases.
Please follow this link to navigate to the latest database version.

hsa-miR-19b-3p


or   Search by location
Loading... Please wait, this might take a few seconds...



Go to Experimental module
Filters

Gene
miRNA
Score
DIANA Links
CTD-2334D19.1
hsa-miR-19b-3p
1.000
mTTBlnEmP

Gene Details
Chromosome: 5
Transcript: ENST00000511422
Biotype: lincRNA
Gene id: ENSG00000248927
Gene Name: CTD-2334D19.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-19b-3p
Sequence: ugugcaaauccaugcaaaacuga
MirBase ID: MIMAT0000074
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
1068-1082
0.176
9
8mer
1016-1038
0.059
8
6mer
816-839
0.003
0
chr22-38_28785274-29006793.1
hsa-miR-19b-3p
1.000
mTTBlnEmP

Gene Details
Chromosome: 22
Transcript: ENST00000623644
Biotype: lincRNA
Gene id: ENSG00000279978
Gene Name: chr22-38_28785274-29006793.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-19b-3p
Sequence: ugugcaaauccaugcaaaacuga
MirBase ID: MIMAT0000074
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
127154-127167
0.014
13
9mer
244476-244488
0.014
0
9mer
238835-238851
0.010
1
9mer
58990-59010
0.010
1
8mer
31671-31683
0.008
1
8mer
130483-130510
0.007
1
8mer
63115-63122
0.007
0
7mer
194270-194287
0.007
2
8mer
37184-37194
0.006
0
7mer
210050-210074
0.006
5
7mer
257082-257108
0.006
1
7mer
72783-72788
0.006
0
7mer
50427-50432
0.005
0
7mer
158540-158562
0.005
2
8mer
107162-107184
0.004
1
7mer
39476-39499
0.004
0
7mer
33769-33782
0.004
0
7mer
139248-139272
0.004
1
7mer
139580-139605
0.003
2
7mer
228417-228439
0.003
1
7mer
21878-21897
0.003
4
6mer
163305-163329
0.003
5
7mer
145213-145235
0.003
1
7mer
17385-17398
0.003
0
6mer
91629-91649
0.002
1
6mer
1055-1074
0.002
1
6mer
162423-162443
0.002
2
6mer
119075-119100
0.002
9
7mer
185933-185956
0.002
0
6mer
248201-248213
0.002
0
6mer
105974-105990
0.002
0
6mer
83463-83480
0.002
2
6mer
54998-55006
0.002
0
6mer
175613-175630
0.002
Not Conserved
6mer
204540-204544
0.002
2
6mer
145967-145983
0.002
0
6mer
235868-235878
0.002
1
6mer
176883-176899
0.002
3
6mer
52723-52746
0.002
0
6mer
198353-198377
0.002
1
6mer
223996-224009
0.002
0
6mer
246451-246470
0.001
0
6mer
196747-196774
0.001
1
6mer
237241-237257
0.001
1
6mer
107742-107768
0.001
1
6mer
192056-192072
0.001
1
6mer
29624-29633
0.001
1
6mer
222408-222429
0.001
0
6mer
69433-69447
0.001
1
6mer
143659-143682
0.001
1
6mer
129563-129585
0.001
1
6mer
11857-11873
0.001
0
6mer
191551-191570
0.001
0
6mer
150644-150648
0.001
2
6mer
211578-211598
0.001
0
6mer
22145-22160
0.001
1
6mer
121726-121736
0.001
1
6mer
77683-77707
0.001
0
6mer
218040-218059
0.001
1
6mer
193495-193511
0.001
0
6mer
230872-230899
0.001
0
6mer
89874-89898
0.001
1
6mer
141315-141336
0.001
2
6mer
103002-103023
0.001
1
6mer
205325-205350
0.001
1
6mer
103631-103655
0.001
0
6mer
16948-16960
0.001
1
6mer
119873-119892
0.001
1
6mer
85954-85973
0.001
0
6mer
50481-50497
0.001
0
6mer
261892-261913
0.001
1
6mer
174553-174566
0.001
0
6mer
235914-235918
0.001
4
6mer
75096-75117
0.001
1
6mer
12049-12072
0.001
0
6mer
235949-235953
0.001
0
6mer
69516-69527
0.001
Not Conserved
6mer
91699-91703
0.001
0
6mer
199004-199023
0.001
Not Conserved
6mer
235979-235983
0.001
0
6mer
235949-235963
0.001
Not Conserved
6mer
235874-235886
0.000
2
6mer
107764-107783
0.000
2
XLOC_004528
hsa-miR-19b-3p
1.000
mTTBlnEmP

Gene Details
Chromosome: chr5
Transcript: TCONS_00009497
Biotype: transcript isomorph
Gene id: XLOC_004528
Gene Name: XLOC_004528
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
- Brain Normal/Primary
- Breast Normal/Primary
- Colon Normal/Primary
Fibroblasts Foreskin Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
Fibroblasts Lung Normal/Primary
- Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Prostate Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-19b-3p
Sequence: ugugcaaauccaugcaaaacuga
MirBase ID: MIMAT0000074
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
1396-1410
0.153
9
8mer
1344-1366
0.056
8
6mer
1144-1167
0.003
0
CTC-529L17.1
hsa-miR-19b-3p
1.000
mTTBlnEmP

Gene Details
Chromosome: 5
Transcript: ENST00000513812
Biotype: lincRNA
Gene id: ENSG00000249169
Gene Name: CTC-529L17.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-19b-3p
Sequence: ugugcaaauccaugcaaaacuga
MirBase ID: MIMAT0000074
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
301-321
0.201
10
6mer
507-511
0.006
2
XLOC_012598
hsa-miR-19b-3p
1.000
mTTBlnEmP

Gene Details
Chromosome: chr18
Transcript: TCONS_00026224
Biotype: transcript isomorph
Gene id: XLOC_012598
Gene Name: XLOC_012598
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-19b-3p
Sequence: ugugcaaauccaugcaaaacuga
MirBase ID: MIMAT0000074
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
1737-1763
0.185
0
8mer
704-720
0.007
Not Conserved
6mer
764-791
0.001
Not Conserved
RP11-523G9.3
hsa-miR-19b-3p
1.000
mTTBlnEmP

Gene Details
Chromosome: 3
Transcript: ENST00000608133
Biotype: lincRNA
Gene id: ENSG00000273193
Gene Name: RP11-523G9.3
UCSC graphic:
Expression:
  Cell Line Tissue Category
MCF7 Mammary Gland Cancer/Malignant


miRNA Details
Name: hsa-miR-19b-3p
Sequence: ugugcaaauccaugcaaaacuga
MirBase ID: MIMAT0000074
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
629-648
0.164
8
RP11-141C7.4
hsa-miR-19b-3p
1.000
mTTBlnEmP

Gene Details
Chromosome: 3
Transcript: ENST00000608379
Biotype: lincRNA
Gene id: ENSG00000272792
Gene Name: RP11-141C7.4
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
LCLBAC - Normal/Primary
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-19b-3p
Sequence: ugugcaaauccaugcaaaacuga
MirBase ID: MIMAT0000074
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
365-384
0.141
1
XLOC_008866
hsa-miR-19b-3p
1.000
mTTBlnEmP

Gene Details
Chromosome: chr10
Transcript: TCONS_00018545
Biotype: transcript isomorph
Gene id: XLOC_008866
Gene Name: XLOC_008866
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adrenal Normal/Primary
- Brain Normal/Primary
- Kidney Normal/Primary
LCLBAC - Normal/Primary


miRNA Details
Name: hsa-miR-19b-3p
Sequence: ugugcaaauccaugcaaaacuga
MirBase ID: MIMAT0000074
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
36-48
0.104
1
6mer
22-42
0.012
1
6mer
6-33
0.012
1
6mer
270-285
0.006
0
6mer
148-171
0.005
0
RP11-475A13.2
hsa-miR-19b-3p
0.999
mTTBlnEmP

Gene Details
Chromosome: 15
Transcript: ENST00000561236
Biotype: lincRNA
Gene id: ENSG00000259395
Gene Name: RP11-475A13.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-19b-3p
Sequence: ugugcaaauccaugcaaaacuga
MirBase ID: MIMAT0000074
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
664-687
0.134
1
RFX3-AS1
hsa-miR-19b-3p
0.999
mTTBlnEmP

Gene Details
Chromosome: 9
Transcript: ENST00000427722
Biotype: lincRNA
Gene id: ENSG00000232104
Gene Name: RFX3-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
LCLBACD1 - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBACD3 - Normal/Primary
LCLBAC - Normal/Primary


miRNA Details
Name: hsa-miR-19b-3p
Sequence: ugugcaaauccaugcaaaacuga
MirBase ID: MIMAT0000074
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
414-436
0.132
7
AC004448.5
hsa-miR-19b-3p
0.999
mTTBlnEmP

Gene Details
Chromosome: 17
Transcript: ENST00000609396
Biotype: lincRNA
Gene id: ENSG00000235979
Gene Name: AC004448.5
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-19b-3p
Sequence: ugugcaaauccaugcaaaacuga
MirBase ID: MIMAT0000074
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
60-83
0.122
1
PRKG1-AS1
hsa-miR-19b-3p
0.999
mTTBlnEmP

Gene Details
Chromosome: 10
Transcript: ENST00000420193
Biotype: antisense
Gene id: ENSG00000236671
Gene Name: PRKG1-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
SK-N-SH Brain Cancer/Malignant
Fibroblasts Foreskin Normal/Primary
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant


miRNA Details
Name: hsa-miR-19b-3p
Sequence: ugugcaaauccaugcaaaacuga
MirBase ID: MIMAT0000074
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
488-510
0.113
9
6mer
713-725
0.005
2
RP11-982M15.7
hsa-miR-19b-3p
0.998
mTTBlnEmP

Gene Details
Chromosome: 14
Transcript: ENST00000554954
Biotype: lincRNA
Gene id: ENSG00000258736
Gene Name: RP11-982M15.7
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-19b-3p
Sequence: ugugcaaauccaugcaaaacuga
MirBase ID: MIMAT0000074
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
456-481
0.086
1
7mer
447-465
0.021
1
6mer
162-185
0.005
0
XLOC_010279
hsa-miR-19b-3p
0.998
mTTBlnEmP

Gene Details
Chromosome: chr12
Transcript: TCONS_00020261
Biotype: transcript isomorph
Gene id: XLOC_010279
Gene Name: XLOC_010279
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
- Brain Normal/Primary
- Breast Normal/Primary
- Colon Normal/Primary
Fibroblasts Foreskin Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
- Lung Normal/Primary
Fibroblasts Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Prostate Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-miR-19b-3p
Sequence: ugugcaaauccaugcaaaacuga
MirBase ID: MIMAT0000074
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
549-567
0.112
0
AC137934.1
hsa-miR-19b-3p
0.997
mTTBlnEmP

Gene Details
Chromosome: 16
Transcript: ENST00000566864
Biotype: lincRNA
Gene id: ENSG00000260923
Gene Name: AC137934.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
MCF7 Mammary Gland Cancer/Malignant


miRNA Details
Name: hsa-miR-19b-3p
Sequence: ugugcaaauccaugcaaaacuga
MirBase ID: MIMAT0000074
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
444-449
0.049
0
7mer
626-640
0.043
0
6mer
451-468
0.012
0
XLOC_011403
hsa-miR-19b-3p
0.997
mTTBlnEmP

Gene Details
Chromosome: chr15
Transcript: TCONS_00023589
Biotype: transcript isomorph
Gene id: XLOC_011403
Gene Name: XLOC_011403
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-19b-3p
Sequence: ugugcaaauccaugcaaaacuga
MirBase ID: MIMAT0000074
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
153-172
0.103
1
LINC00658
hsa-miR-19b-3p
0.994
mTTBlnEmP

Gene Details
Chromosome: 20
Transcript: ENST00000599273
Biotype: lincRNA
Gene id: ENSG00000226995
Gene Name: LINC00658
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-19b-3p
Sequence: ugugcaaauccaugcaaaacuga
MirBase ID: MIMAT0000074
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
48-65
0.094
3
RP11-522N14.2
hsa-miR-19b-3p
0.994
mTTBlnEmP

Gene Details
Chromosome: 12
Transcript: ENST00000539391
Biotype: lincRNA
Gene id: ENSG00000256596
Gene Name: RP11-522N14.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-19b-3p
Sequence: ugugcaaauccaugcaaaacuga
MirBase ID: MIMAT0000074
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
1404-1421
0.049
0
7mer
1951-1965
0.045
2
TMEM254-AS1
hsa-miR-19b-3p
0.993
mTTBlnEmP

Gene Details
Chromosome: 10
Transcript: NR_027430.1
Biotype: antisense
Gene id: NR_027430.1 (gene)
Gene Name: TMEM254-AS1
UCSC graphic: -
Expression: -


miRNA Details
Name: hsa-miR-19b-3p
Sequence: ugugcaaauccaugcaaaacuga
MirBase ID: MIMAT0000074
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
407-428
0.042
0
8mer
285-306
0.022
0
9mer
3020-3044
0.016
0
7mer
1993-2013
0.005
0
6mer
3525-3548
0.003
1
7mer
1161-1181
0.003
0
6mer
1798-1819
0.001
0
TMEM254-AS1
hsa-miR-19b-3p
0.992
mTTBlnEmP

Gene Details
Chromosome: 10
Transcript: NR_027431.2
Biotype: antisense
Gene id: NR_027431.2 (gene)
Gene Name: TMEM254-AS1
UCSC graphic: -
Expression: -


miRNA Details
Name: hsa-miR-19b-3p
Sequence: ugugcaaauccaugcaaaacuga
MirBase ID: MIMAT0000074
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
407-428
0.042
0
8mer
285-306
0.020
0
9mer
3020-3044
0.016
0
7mer
1993-2013
0.005
0
6mer
3499-3522
0.003
1
7mer
1161-1181
0.003
0
6mer
1798-1819
0.001
0
Funded by:
We have placed cookies on your device to help make this website and the services we offer better. By using this site, you agree to the use of cookies. Learn more
I accept